PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genewise1.C_120284
Common NameCHLNCDRAFT_31479
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 189aa    MW: 21824.2 Da    PI: 5.9741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genewise1.C_120284genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.6e-124368126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                               y   +C+++ +tG+C yGd CkF+H+
  estExt_Genewise1.C_120284 43 YQPDICKDYKETGYCGYGDACKFMHD 68
                               67789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.05E-93973IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5774270IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-74269IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-104368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-124373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.3E-11101163IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139204.8E-7118163No hitNo description
SuperFamilySSF578503.03E-10118164No hitNo description
PROSITE profilePS500899.819119160IPR001841Zinc finger, RING-type
SMARTSM001840.0014119159IPR001841Zinc finger, RING-type
PROSITE patternPS005180137146IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNSYKDFRAG FRREHTVGAE KGSGSHGPLR ASTNVRMTVR FDYQPDICKD YKETGYCGYG  60
DACKFMHDRG DYKAGWEIDR DWDTQQKEKR ERLLAGWKPE DEEEEAKDSE EDDELPFACL  120
ICRRPWAEAQ DPVVTRCKHY FCEQCALQHN AKTPKCFACE QPTGGIFNVA HEIVRREKAR  180
QRKEAGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-531186156327RING finger protein 113A
5z58_M2e-531186156327RING finger protein 113A
6ff4_t2e-531186156327RING finger protein 113A
6ff7_t2e-531186156327RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005846922.11e-139hypothetical protein CHLNCDRAFT_31479
SwissprotQ8GX845e-76C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLE1ZGV81e-138E1ZGV8_CHLVA; Uncharacterized protein
STRINGXP_005846922.11e-139(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.14e-77C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]