PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genewise1Plus.C_40583
Common NameCHLNCDRAFT_34551
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family NF-X1
Protein Properties Length: 898aa    MW: 95460.1 Da    PI: 7.719
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genewise1Plus.C_40583genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.5e-05280299120
                      zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                                   CG+H C++ CH G C+pC++
  estExt_Genewise1Plus.C_40583 280 CGRHHCEEVCHAGTCGPCKL 299
                                   ******************95 PP
2zf-NF-X116.22.3e-05415432320
                      zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                                   +H+C ++CH G+C pCp+
  estExt_Genewise1Plus.C_40583 415 NHRCPAPCHSGECAPCPL 432
                                   7***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359060131IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.0022174192IPR000967Zinc finger, NF-X1-type
CDDcd060085.11E-5216264No hitNo description
SMARTSM004380.21226244IPR000967Zinc finger, NF-X1-type
CDDcd060083.19E-7270311No hitNo description
SMARTSM004380.002280299IPR000967Zinc finger, NF-X1-type
CDDcd060081.29E-8324373No hitNo description
SMARTSM004380.23334354IPR000967Zinc finger, NF-X1-type
SMARTSM0043894387405IPR000967Zinc finger, NF-X1-type
CDDcd060087.91E-10403451No hitNo description
SMARTSM004380.0027413432IPR000967Zinc finger, NF-X1-type
SMARTSM0043830470491IPR000967Zinc finger, NF-X1-type
SMARTSM004380.32626648IPR000967Zinc finger, NF-X1-type
SMARTSM004385.1657677IPR000967Zinc finger, NF-X1-type
SMARTSM0043815719739IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MSAPSSRAHC ESTLFESYAA ACRTGAEVEG GDGGDGAAFE EGVERVKEHL LSASGDGAIC  60
MVCLENIRPT DSVWSCQDGC YAVLHLPCVQ SWARRTLAMV QEKAEQRLDP RLFPAAAAEA  120
RRTAAWGCPK CRQDYEAVPG GYTCWCGKVA NPDFNPWGTA HSCGEHCERP APSCEHPCML  180
LCHPGPCPPC PRVISTSCFC GALVTDKRCG HHEFSCGGTC YALLPCGHTC PAICHDGGCP  240
PCGELVSTVS CLCGAEVAQL PCSQQELFKC PRVCGKLLDC GRHHCEEVCH AGTCGPCKLA  300
GPKACPCAKT QLADAACDVV VGPCGETCGK LLICGVHTCH ERCHAGPCTT VCREQVKKRC  360
ECGQTERVVQ CHESFKCERR CEKMRSCERH PCRRRCCVAC PPCEEVCKRW LKCRNHRCPA  420
PCHSGECAPC PLSARISCAC GKTHYSVPCG RESTAKPPPC RQPCPVPSLC RHAAAQPPHC  480
CHFGPCPPCT VPACGTQLAC GHACSLLHCH DPPPPATPEY QPPPPPVSPV VLALPGSASG  540
SGSSSSSSSK QQQPERQLPP AQATAAAARR LQNTMPRTPE GQLSSCLPCP IPVPVTCFGG  600
HITVQVACNS AAPFACQQPC GRKLECGNHT CSLTCHDDAQ QQCAYCTLPC QRPRDTCEHA  660
CPLPCHPASQ ACPACLVGIR VPCHCGRTTL EFSCCEINAA APSARLNCGK TCHRELPGCP  720
HTCELECHAG TCTSVGCAKE VTVRCACKRN KRKLACAEVQ RLLLAATGSG TYDDTTSLRL  780
LICDDGCAKA AATEAAAAPA AAKGSGDVPG APLTPPMATK ASTAAAEAPK RKMTREEKQR  840
ERELARQQKD AEERRKQIVH GLVFGVLLCI AVLLALFLRH LALVVDRKAQ EAWRPEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005850221.10.0hypothetical protein CHLNCDRAFT_34551
TrEMBLE1Z7710.0E1Z771_CHLVA; Uncharacterized protein
STRINGXP_005850221.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP530277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-93sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]