PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_170042

Common Name

COCSUDRAFT_48716

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bHLH

Protein Properties

Length: 244aa MW: 25768.2 Da PI: 7.3042

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_170042	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	60	109	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h++ E+rRRdri +++ Lre++ ++ ++K + a+ L+ A eYI++Lq estExt_fgenesh1_pg.C_170042 60 KEKHSATEKRRRDRIHEGIVMLREVVVPQ----KEKEDQAAFLRSAAEYIRQLQ 109 789***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-14	55	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.5E-15	56	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.81E-13	56	113	No hit	No description
PROSITE profile	PS50888	13.459	58	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	60	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-7	64	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSAPNTDLGE LAAIPLSQIL GSKPGTSTDD QAAAASPAPG PVTQPSSARA TSAEGSSRSK 60 EKHSATEKRR RDRIHEGIVM LREVVVPQKE KEDQAAFLRS AAEYIRQLQT ALQCFTAMGA 120 VKNLPEEVQW SIRALLSRGV PAAAPAAPAA APPLSFPGLP QVLLQLMGNM NGKEQLQAHA 180 QALDPAQMQS AMQQAMMVQQ WQHHLQQCAA QAAHPGQQHL PGMSCHDPQP HPASDAGAGV 240 KEQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005644417.1	1e-175	hypothetical protein COCSUDRAFT_48716
TrEMBL	I0YNA4	1e-174	I0YNA4_COCSC; Uncharacterized protein
STRING	XP_005644417.1	1e-174	(Coccomyxa subellipsoidea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-09	phytochrome interacting factor 3

Link Out ? help Back to Top
Entrez Gene	17037847

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]