PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_40271

Common Name

COCSUDRAFT_46687

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 239aa MW: 25548.6 Da PI: 10.9566

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_40271	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.1	4.3e-09	210	239	2	31
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeL 31 +el+r+rr+ +NRe+ArrsR+RK++ + L estExt_fgenesh1_pg.C_40271 210 AELRRARRMLSNRESARRSRRRKQEHLSTL 239 699**********************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.3E-6	204	238	No hit	No description
Pfam	PF00170	6.0E-7	210	239	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.87E-5	212	239	No hit	No description
PROSITE pattern	PS00036	0	216	231	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MQRQFSVDDF NNLSGFWKLG ASMAGFPRTD SEAAFQDFLK RIPSTSNLAA QAQGLDQAQQ 60 LHLQQQVQQF QQAQQAGLHA AGSGGALGEV GGLNVGGIPR VPSLDLLRQL VQVNQTLSPQ 120 GHKGPTSMPE VGIRSTEPEL APAVSSVAAT MPLLSSVPLS SGLPQTSSNV NPVAAALQLG 180 NFHGIHPQQV RSSGNTSDCG PSDKETNGKA ELRRARRMLS NRESARRSRR RKQEHLSTL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	232	RRSRRRKQ
2	227	232	SRRRKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649906.1	1e-172	hypothetical protein COCSUDRAFT_46687, partial
TrEMBL	I0Z3Z3	1e-171	I0Z3Z3_COCSC; Uncharacterized protein (Fragment)
STRING	XP_005649906.1	1e-172	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5228	8	9

Link Out ? help Back to Top
Entrez Gene	17043364

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]