PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_Chr_03.00010061

Common Name

OT_ostta03g00840

Organism

Ostreococcus tauri

Taxonomic ID

70448

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

MYB_related

Protein Properties

Length: 500aa MW: 53530.8 Da PI: 9.4422

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_Chr_03.00010061	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4e-10	402	451	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 ++W eE e lv++v+q Ggg W+ I + +g ++Rt+ ++k++w+++l estExt_fgenesh1_pg.C_Chr_03.00010061 402 NPWALEEAEALVRGVAQCGGGKWADIKK-LGfpaiEHRTAVDLKDKWRNLL 451 68*********************966.5557**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.975	396	455	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-13	398	452	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.77E-15	398	459	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-6	400	453	IPR001005	SANT/Myb domain
Pfam	PF00249	9.0E-7	402	451	IPR001005	SANT/Myb domain
CDD	cd11660	1.11E-20	403	452	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MSVVQTPGSR VVPSRHLRRD GAPAAVRSYR FPNGTDLHGD EEGSSFMADP IDAAGLERAF 60 ASDPVLKEAE REILSKTNAQ RIAAAERGAL LEHGKQFDSM LGMKTIYSSG SGASDDDDKA 120 STQSVAYLYP GIDGASNRSY SPFDLTLDEA AENLLCDFGA PNIDGAYGLI DDDGSEIFVQ 180 HTAPPLSAWM SNGNLCGLDA PPGHEPAWAS GGRSEAYEHI PAVVEFGVPG HTEVESIASL 240 RAQYRALFGK DTNSNNRQWI IKRLEAFRNG DDLTPPSSRY SSPLSGEDTY VGGARFKQSV 300 SSPKRAAGKR QVKSARSLYD EEVDEHESAR RGAVKGRGKV VKGKRVAEAS LPKSNTKKAK 360 SVSDAESADG SSAKGGARGT ARPAARSKQG ENGTGRRSKH HNPWALEEAE ALVRGVAQCG 420 GGKWADIKKL GFPAIEHRTA VDLKDKWRNL LRIAMLPAQS VKTVGDKKRE IPQELLAKVR 480 ELAAKQAKAK AAMEAARGR*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MSVVQTPGSR VVPSRHLRRD GAPAAVRSYR FPNGTDLHGD EEGSSFMADP IDAAGLERAF  60
ASDPVLKEAE REILSKTNAQ RIAAAERGAL LEHGKQFDSM LGMKTIYSSG SGASDDDDKA  120
STQSVAYLYP GIDGASNRSY SPFDLTLDEA AENLLCDFGA PNIDGAYGLI DDDGSEIFVQ  180
HTAPPLSAWM SNGNLCGLDA PPGHEPAWAS GGRSEAYEHI PAVVEFGVPG HTEVESIASL  240
RAQYRALFGK DTNSNNRQWI IKRLEAFRNG DDLTPPSSRY SSPLSGEDTY VGGARFKQSV  300
SSPKRAAGKR QVKSARSLYD EEVDEHESAR RGAVKGRGKV VKGKRVAEAS LPKSNTKKAK  360
SVSDAESADG SSAKGGARGT ARPAARSKQG ENGTGRRSKH HNPWALEEAE ALVRGVAQCG  420
GGKWADIKKL GFPAIEHRTA VDLKDKWRNL LRIAMLPAQS VKTVGDKKRE IPQELLAKVR  480
ELAAKQAKAK AAMEAARGR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022838426.1	0.0	SANT/Myb domain
TrEMBL	A0A096P7L8	0.0	A0A096P7L8_OSTTA; SANT/Myb domain
STRING	A0A096P7L8	0.0	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP1276	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	7e-19	TRF-like 6

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]