PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_03.00010215
Common NameOT_ostta03g02980
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 227aa    MW: 25489.5 Da    PI: 6.2979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_03.00010215genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14154198347
                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                           +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  estExt_fgenesh1_pg.C_Chr_03.00010215 154 PWTEEEHRLFLLGLNKFGKGDWRSISRNFVVTRTPTQVASHAQKY 198
                                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071732479IPR001005SANT/Myb domain
SuperFamilySSF466896.07E-52781IPR009057Homeodomain-like
PROSITE profilePS500905.6572777IPR017877Myb-like domain
CDDcd001670.004472777No hitNo description
PROSITE profilePS5129418.064147203IPR017930Myb domain
SuperFamilySSF466891.04E-17149204IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17151201IPR006447Myb domain, plants
SMARTSM007172.4E-12151201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-12151197IPR009057Homeodomain-like
PfamPF002492.0E-12154198IPR001005SANT/Myb domain
CDDcd001673.86E-10154199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSTLDFGYGD AGFMYSSLGL LGTDSVSWSF EEDKFFETNL AQYDGWPITG DDYWGQLQQQ  60
MPQKAVQELK DRYAKLKEDI REIESGFVSL PEYYDEGVDS EDYVTAEVSF APMKTVKAQP  120
AAPAVQAPAP AAPPAKKSKN VPKTGDQERR KGVPWTEEEH RLFLLGLNKF GKGDWRSISR  180
NFVVTRTPTQ VASHAQKYFI RLNSMSKKDN KRRSSIHDIT SATGRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003078210.21e-169Myb domain, plants
SwissprotQ9FNN61e-51SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A090LYZ51e-167A0A090LYZ5_OSTTA; Myb domain, plants
STRINGA0A090LYZ51e-168(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-44MYB family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]