PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_04.00010028
Common NameOT_ostta04g00370
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 547aa    MW: 59407.6 Da    PI: 6.8145
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_04.00010028genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.4e-06231251526
                                           --SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                            C+ f++ G C+ Gd C +aHg
  estExt_fgenesh1_pg.C_Chr_04.00010028 231 ACPEFRK-GSCPQGDVCEYAHG 251
                                           5******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002047.21E-136129No hitNo description
SuperFamilySSF484031.12E-146128IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-156126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00465180IPR002110Ankyrin repeat
PROSITE profilePS5029715.9951126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.6445183IPR002110Ankyrin repeat
PfamPF136373.9E-552109No hitNo description
SMARTSM002488.486118IPR002110Ankyrin repeat
PROSITE profilePS500888.65686121IPR002110Ankyrin repeat
SMARTSM003560.0016226252IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.169226253IPR000571Zinc finger, CCCH-type
SMARTSM0035624261284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MSLSTSPVLA AAASNDLSQI RWLIERENVP VDFVGDWYAE PRSGGKGLER QRRTPCMVAA  60
SHGALEVLLY VLQMGADPNK RSEDDERCTA MHCAAAGGAA LSTEAIRTLL MFGADRNARD  120
MYGRVPADCL PSTTSDPMYG SSDAGGSSSG GSASTGGNRG HGPSSQAVNS QAALQDPDEE  180
TLMSDEFRMY EFKIRRCSRT RAHDWTECPY THPGEKARRR DPRRFNYCGT ACPEFRKGSC  240
PQGDVCEYAH GVFECWLHPS RYRTQLCKDG PACDRRACFF AHHTSQLRVP TDAHGNPIGN  300
VSPNTPSPTG SGSPQSSPRQ SSASVDWGQR SSESDSIPNS MAAAILKGNM MANASAQFGN  360
GLQFPQMSRA MDQMLGQPQY SQSSSQQFLS IQRDQQPMRQ QQEFAQHNVQ AQQQQFLVNY  420
ASLMNGMDFQ GSAQSTFPLG FGNMIQGSSG TMGHGENTYQ SQQRHMLSQK SAVTTNSHAS  480
VQSGTRMESA ASYADKYGLN AGAKVFTLPG GDQFSHIRRN SDSFQHLGMI EGVLDGEEVA  540
GAREYQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838679.10.0Ankyrin repeat
TrEMBLA0A090N3330.0A0A090N333_OSTTA; Ankyrin repeat
STRINGA0A090N3330.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.25e-70C3H family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]