PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_Chr_06.00010275

Common Name

OT_ostta06g03980

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 224aa MW: 24500.7 Da PI: 6.504

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_Chr_06.00010275	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.5	5.5e-09	125	148	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C f r G+C++Gd+C+F+Hgp estExt_fgenesh1_pg.C_Chr_06.00010275 125 VPKCYAFER-GECNRGDSCRFSHGP 148 678****.***********96 PP
2	zf-CCCH	23.4	1e-07	168	188	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C f+ G C+yGd+C+F+H+p estExt_fgenesh1_pg.C_Chr_06.00010275 168 CYAFQN-GNCSYGDSCRFSHDP 188 677777.*************86 PP
3	zf-CCCH	20.7	7.2e-07	204	222	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C +a+ G C +Gd+C+F+H estExt_fgenesh1_pg.C_Chr_06.00010275 204 CYAWAE-GNCTRGDSCRFSH 222 999*.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13451	7.3E-21	75	120	IPR025306	Probable zinc-binding domain
PROSITE profile	PS50103	14.436	122	149	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-4	122	148	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.7E-7	125	148	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-4	128	148	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5E-4	164	188	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.887	167	189	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	167	188	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.54E-5	167	189	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-5	168	188	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	198	223	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2	200	223	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-4	204	222	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016874	Molecular Function	ligase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MAEKKEKKEK KEKKEKKEKK EKRERSSDEE TADEVEDKRP KVEDAEEEEE DGFKVHKKSD 60 ADLSGKATIS TGNYEDITLN CRDCNGEFVF TVGEQEFYSS KGWTNQPTRC EPCKKAKKER 120 FGEDVPKCYA FERGECNRGD SCRFSHGPGS AAGRGGGGGG GGGGGGVCYA FQNGNCSYGD 180 SCRFSHDPNA PPSRPGSRGP PGKCYAWAEG NCTRGDSCRF SHE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022839293.1	1e-159	Putative E3 ubiquitin-protein ligase,makorin-related
TrEMBL	A0A090M8R0	1e-158	A0A090M8R0_OSTTA; Putative E3 ubiquitin-protein ligase,makorin-related
STRING	A0A090M8R0	1e-158	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3507	13	14

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]