PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_11.00010228
Common NameOT_ostta11g03070
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 634aa    MW: 68135.7 Da    PI: 5.2462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_11.00010228genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271.1e-082676147
                                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS
                       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47
                                          rg W  +E++ l++av+++G g W++  +         Rt+ q+k++w+++
  estExt_fgenesh1_pg.C_Chr_11.00010228 26 RGYWRGDEEQALKRAVRKHGIGAWEKMRNDPEfialRSRTGVQLKDKWRNL 76
                                          789*******************99997777779999999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-72579IPR001005SANT/Myb domain
PROSITE profilePS500908.2352677IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-142684IPR009057Homeodomain-like
SuperFamilySSF466892.18E-122681IPR009057Homeodomain-like
PfamPF002491.0E-52676IPR001005SANT/Myb domain
CDDcd116601.88E-152978No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MVGKPRASTE ARTTTTTAAD GGAPARGYWR GDEEQALKRA VRKHGIGAWE KMRNDPEFIA  60
LRSRTGVQLK DKWRNLIKFQ HLRKDEAAKV PYKAAVRARA GSGKSAGSGA NVGGSAGRGG  120
SASKSGAKST AKGGVAGKGG AQAGKKSIGA GGSKKTTKVS RDALSKKGGN AGGAASTMSA  180
KEMLKANFGR GHRDDDAEDD DDDGDVKTDV AVKYDPELDA SLDTLKKKRA GMVNEVENAE  240
RELARMKTVV EEAEAVYSSA RARVHEVLVG EHGKDDYEAE EGAGPEDETD WDKYLHFGEH  300
ETDDEEDEEV ARAAEAAAEA HAAVVRATSA KKPSEKRPRV TGDEDEHATD QDDDSDREVE  360
DPDDSDEEID EDDEDLDEEE RIARMANAVL AEAGLPPMHE IEHVLLTELK KLEAANAAVV  420
HARLALEAVD AEFHEAVVNA HNAAARAQQA VAFDADEEAF GIDEDDELDD EQQDAKESRS  480
APTKSKAKQK IKSVTQTDGT DASGGRVVED RRYGIYDARR YRSEAENDAE AAAAAKSTRV  540
PSTTGKRKNP TMPTPTKGSK SAKKENDIWY ELPKPAAMSA TGHKEQQHTI TTRKVGSDGL  600
TWRRKRTATR VTIGRPVAGP TSWAAIGQHI IKE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840002.10.0SANT/Myb domain
TrEMBLA0A090M6680.0A0A090M668_OSTTA; SANT/Myb domain
STRINGA0A090M6680.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP413177
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-10MYB_related family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]