PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_13.00010057
Common NameOT_ostta13g00740
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 203aa    MW: 22040.2 Da    PI: 4.7002
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_13.00010057genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10959247
                                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
                       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                                            WT eE+  l d+v+++G g W++I          ++R+  ++k++w+++
  estExt_fgenesh1_pg.C_Chr_13.00010057  9 REWTVEEERALRDGVQKYGAGKWRAIQLDPTfglalNHRSNVDLKDKWRNL 59
                                          68*************************987777****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.21164IPR017930Myb domain
SuperFamilySSF466894.11E-16662IPR009057Homeodomain-like
SMARTSM007175.0E-8762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-15859IPR009057Homeodomain-like
CDDcd116601.73E-20959No hitNo description
PfamPF139216.0E-81162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MLKIPAVKRE WTVEEERALR DGVQKYGAGK WRAIQLDPTF GLALNHRSNV DLKDKWRNLH  60
ANGGSAEAEP TATEVKLGAM TREVSSSGRE QSGEKAAKRR KEDESEDASG GRALTGAHEA  120
QVNELMAETQ RAKREAETAL AAATEAEREA ERAEREAWEA EKLASELVTE AHRQKVGLPV  180
EGAEDVADVA AELLDEDERG GG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840173.11e-139SANT/Myb domain
TrEMBLA0A096P7B51e-138A0A096P7B5_OSTTA; SANT/Myb domain
STRINGA0A096P7B51e-139(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3956912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-17MYB_related family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]