PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pm.C_10186

Common Name

COCSUDRAFT_52190

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

NF-YC

Protein Properties

Length: 141aa MW: 15198 Da PI: 4.6638

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pm.C_10186	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59	1e-18	16	96	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 + lPl rikk++k + dvk ++a+a ++a e++i ++ r++ + +r t+ d+a++v++ +fl divp+ estExt_fgenesh1_pm.C_10186 16 AEVLPLNRIKKLMKEEADVKAVAADASYAAARATEFLIEAMAARAFQVTLAENRDTISYGDVATSVSQWAATEFLRDIVPQ 96 6789***************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-20	19	96	IPR009072	Histone-fold
Pfam	PF00808	1.9E-12	19	80	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.26E-15	19	95	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MATHDFQEAE TSHAPAEVLP LNRIKKLMKE EADVKAVAAD ASYAAARATE FLIEAMAARA 60 FQVTLAENRD TISYGDVATS VSQWAATEFL RDIVPQRVPL SEIIKRLRTS NEQSQAAGNG 120 EVIDGKDEVM HTPNGGIVQS *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005652065.1	2e-99	hypothetical protein COCSUDRAFT_52190
TrEMBL	I0ZA52	4e-98	I0ZA52_COCSC; Uncharacterized protein
STRING	XP_005652065.1	7e-99	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10859	3	3

Link Out ? help Back to Top
Entrez Gene	17045536

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]