PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pm.C_10273

Common Name

COCSUDRAFT_52243

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

NF-YC

Protein Properties

Length: 236aa MW: 24616.6 Da PI: 4.6365

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pm.C_10273	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	44.9	2.5e-14	7	84	20	96
NF-YC 20 elPl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 + Pl arikki++adedv +i+ +Pvll +a elf+ +l + a++++ rtl + ++a v + ++ dfl ++ estExt_fgenesh1_pm.C_10273 7 NHPLsARIKKIMQADEDVGKIAQATPVLLGRAVELFLKQLCDGAVAIANSKDARTLSAAHLKAYVMSDTTMDFLKQTM 84 556636********************************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.5E-21	12	71	IPR009072	Histone-fold
Pfam	PF00808	1.1E-14	12	69	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.24E-16	12	87	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MKGKKLNHPL SARIKKIMQA DEDVGKIAQA TPVLLGRAVE LFLKQLCDGA VAIANSKDAR 60 TLSAAHLKAY VMSDTTMDFL KQTMASAPDI AAEDEEPAPK PKRRRKTAEE GPGSPKPGRG 120 RGKKAAAKQE DFEEAEMDLR EAAAANAEDA PAGVKPEDVS TAEVHNPEGH ASREEPAAAV 180 PPKQEDIEAG GDPASGTESA QPVQPALAAA PLLPIGIPAA AAATIAEEDD YDDFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-15	12	71	15	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005652243.1	1e-166	hypothetical protein COCSUDRAFT_52243
TrEMBL	I0ZAN0	1e-165	I0ZAN0_COCSC; Uncharacterized protein
STRING	XP_005652243.1	1e-166	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3343	13	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-20	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Entrez Gene	17045858

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]