PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pm.C_160127
Common NameCOCSUDRAFT_54465
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C3H
Protein Properties Length: 209aa    MW: 21812.6 Da    PI: 8.2906
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pm.C_160127genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345.1e-113559227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                 kt+lC+++   G+C++G+rC+FaHg+
  estExt_fgenesh1_pm.C_160127 35 KTKLCMRWKN-GHCRFGERCNFAHGE 59
                                 8*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-153265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-93364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.6433360IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-73359IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-83559IPR000571Zinc finger, CCCH-type
SuperFamilySSF510459.49E-11166204IPR001202WW domain
SMARTSM004564.8E-9173205IPR001202WW domain
CDDcd002013.12E-10175203No hitNo description
PROSITE profilePS5002014.599175205IPR001202WW domain
PfamPF003971.3E-10175203IPR001202WW domain
Gene3DG3DSA:2.20.70.107.4E-11177204No hitNo description
PROSITE patternPS011590178203IPR001202WW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDGAFPSGTK GEGFDAGAEY AEQRKGFRGN AENAKTKLCM RWKNGHCRFG ERCNFAHGEE  60
ELRKLPARGN GFQGPGPYGG QSDFRGSFEG GGYPQRSSGP AGFNSYGAGY SGGYGAGFGN  120
PGQGGGLGGP SVGGYGGHPR EIVSASNPGQ RPGGVNGRGD AWGGQVPAYA PVIGPEGWTE  180
YRAPDGQAYY YNHNTKENTW DKPPCWGQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005644870.11e-146hypothetical protein COCSUDRAFT_54465
TrEMBLI0YPK71e-145I0YPK7_COCSC; Uncharacterized protein
STRINGXP_005644870.11e-145(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP569077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-09C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]