PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pm.C_170068

Common Name

COCSUDRAFT_54523

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 78aa MW: 8816.99 Da PI: 9.1178

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pm.C_170068	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.7	5.8e-14	7	52	1	46
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +++ k++ rk+kNR +A +sR+R++a+++ Lee+v++L++e + L estExt_fgenesh1_pm.C_170068 7 DRDAKKQLRKEKNRASAAASRARREAYTASLEEEVAKLKEEKSWLE 52 5899*************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-13	5	56	No hit	No description
SMART	SM00338	5.7E-6	7	74	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-11	8	52	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.588	9	56	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-11	11	58	No hit	No description
PROSITE pattern	PS00036	0	15	29	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
MEDHMEDRDA KKQLRKEKNR ASAAASRARR EAYTASLEEE VAKLKEEKSW LEGQVNSPDH 60 AMPMSLPARA PMRHLSL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005644568.1	2e-48	hypothetical protein COCSUDRAFT_54523
TrEMBL	I0YNQ5	4e-47	I0YNQ5_COCSC; Uncharacterized protein
STRING	XP_005644568.1	7e-48	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17037998

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]