PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pm.C_190072

Common Name

COCSUDRAFT_54678

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

G2-like

Protein Properties

Length: 125aa MW: 13276.6 Da PI: 10.2946

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pm.C_190072	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	23.5	1.2e-07	6	22	39	55
G2-like 39 kgLtlehvkSHLQkYRl 55 gLt+++v+SHLQkYR estExt_fgenesh1_pm.C_190072 6 AGLTRQNVASHLQKYRK 22 69**************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.2E-6	6	23	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MGPIAAGLTR QNVASHLQKY RKRHTAQSDF CKAAAYCPPA AYPCWSPFAT PYMMGGHACA 60 LPHAPWATVA SMIPTSQPQA QPSESINAII ADVLKKPKGK PPIGLKLDTG KVMEAVSKGL 120 HLRK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005643953.1	2e-87	hypothetical protein COCSUDRAFT_54678
TrEMBL	I0YLZ0	4e-86	I0YLZ0_COCSC; Uncharacterized protein
STRING	XP_005643953.1	6e-87	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17037349

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]