PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pm.C_50143

Common Name

COCSUDRAFT_53049

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

NF-YB

Protein Properties

Length: 149aa MW: 16517.8 Da PI: 4.681

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pm.C_50143	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	65.2	1.3e-20	2	94	4	96
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 +d lP a v +i+k++lP++ +++ ++ +++ +c efi +v sea+ +++ekr tin++ ++ al +lGf +e ++v+lk estExt_fgenesh1_pm.C_50143 2 EDVSLPRATVEKIVKEILPKDIRLATNTLDLLLDCCGEFIQLVYSEANTVSEEEKRSTINPEHVVRALDSLGFSSLLEDVNVFLK 86 5789********************************************************************************* PP NF-YB 89 kyrelege 96 + ++++++ estExt_fgenesh1_pm.C_50143 87 EVKDTDQK 94 99998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.27E-30	2	132	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.7E-34	2	130	IPR009072	Histone-fold
Pfam	PF00808	5.2E-14	5	69	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MEDVSLPRAT VEKIVKEILP KDIRLATNTL DLLLDCCGEF IQLVYSEANT VSEEEKRSTI 60 NPEHVVRALD SLGFSSLLED VNVFLKEVKD TDQKRSLKRH DSKAAEQNKM SEEEQIALQK 120 KLFAEARART LSCALPDAAV NSEMPGTA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-27	2	127	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649265.1	1e-104	DR1-like protein
TrEMBL	I0Z252	1e-103	I0Z252_COCSC; DR1-like protein
STRING	XP_005649265.1	1e-104	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2422	15	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	1e-35	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Entrez Gene	17042722

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]