PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh3_pg.C_10363
Common NameCHLNCDRAFT_56603
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB_related
Protein Properties Length: 241aa    MW: 27545.2 Da    PI: 12.0777
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh3_pg.C_10363genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-10102151247
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 
                                 +rWT +E   l ++v+++G g+W+++ +        gRt  ++k++w+++
  estExt_fgenesh3_pg.C_10363 102 QRWTSQEVAELQRLVAMHGEGQWALVLKQGRavfaAGRTSVDIKDKWRNL 151
                                 8*****************************9*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-1295153IPR009057Homeodomain-like
PROSITE profilePS5129412.1996156IPR017930Myb domain
SuperFamilySSF466891.96E-1298159IPR009057Homeodomain-like
SMARTSM007175.5E-7100154IPR001005SANT/Myb domain
PfamPF002492.6E-9101151IPR001005SANT/Myb domain
CDDcd116601.78E-12102152No hitNo description
Gene3DG3DSA:1.10.10.601.3E-7165227IPR009057Homeodomain-like
SMARTSM007170.13171225IPR001005SANT/Myb domain
CDDcd116602.74E-10173224No hitNo description
PROSITE profilePS500905.668174223IPR017877Myb-like domain
SuperFamilySSF466894.76E-8174225IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDQGSPAKAA RARRQQAARG GPHQPAGQQP RVQEQPTPQK RRQTVPTPLA KLIRAEERLR  60
QREVKTERNK REAKARRSEE QEGRPPAAPP VTPQLKRRRQ TQRWTSQEVA ELQRLVAMHG  120
EGQWALVLKQ GRAVFAAGRT SVDIKDKWRN LNTPPRQREG DAGPSQKRGR VAIPWDSWEV  180
EELRRQVELH GGSNWLLVQD QGRGVFRDRR TAVDLKDKWR LLQRKAARAE RELQAAAPRA  240
*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851924.11e-166hypothetical protein CHLNCDRAFT_56603
TrEMBLE1Z3D11e-165E1Z3D1_CHLVA; Uncharacterized protein
STRINGXP_005851924.11e-166(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP650666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.17e-09TRF-like 6
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]