PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

estExt_fgenesh3_pg.C_20344

Common Name

CHLNCDRAFT_56806

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 240aa MW: 25025 Da PI: 8.9325

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh3_pg.C_20344	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	44.3	3.8e-14	113	176	21	84
NF-YC 21 lPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 +P +k+i+ +d++v+++sa+a ++ka elf+ +l+ r+ ha+ kr+ +k d+a + estExt_fgenesh3_pg.C_20344 113 FPTGVVKRIMMVDDEVQRVSADAVRAIAKATELFVQQLAARALQHAQAGKRKNFKEPDVAHVAG 176 78889******************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00398	1.6E-9	1	75	IPR009071	High mobility group box domain
SuperFamily	SSF47095	7.59E-13	1	70	IPR009071	High mobility group box domain
CDD	cd01390	7.52E-10	2	70	No hit	No description
Gene3D	G3DSA:1.10.30.10	6.8E-14	2	72	IPR009071	High mobility group box domain
PROSITE profile	PS50118	13.141	2	75	IPR009071	High mobility group box domain
Pfam	PF00505	2.9E-11	2	71	IPR009071	High mobility group box domain
SuperFamily	SSF47113	1.32E-13	112	176	IPR009072	Histone-fold
Pfam	PF00808	2.4E-12	113	173	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.4E-17	113	179	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MPPRGQTAYF LFSEEHRAAA KADLAAQDGA KAGVAQVAKL VGAKWAALSD EEKQQYKDRA 60 AAKTRQMKEE AAAAAAAQGQ QQQSPGGEGA AAGEEPAPAA VGGGGAAPPP FGFPTGVVKR 120 IMMVDDEVQR VSADAVRAIA KATELFVQQL AARALQHAQA GKRKNFKEPD VAHVAGRDRR 180 LVDMGLREVL EQHGATSGGG GEEGENAAAQ KQRNAKRQMQ EEAAAGTRQI TAFFNLEAT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005851642.1	1e-167	hypothetical protein CHLNCDRAFT_56806
TrEMBL	E1Z3U0	1e-166	E1Z3U0_CHLVA; Uncharacterized protein
STRING	XP_005851642.1	1e-167	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4674	11	11

Link Out ? help Back to Top
Entrez Gene	17358396

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]