PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

estExt_gwp_GeneWisePlus.C_Chr_02.00010270

Common Name

E2F

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 313aa MW: 34684.4 Da PI: 7.3882

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_gwp_GeneWisePlus.C_Chr_02.00010270	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	65.9	5.4e-21	33	91	4	67
E2F_TDP 4 ksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkeknei 67 +sL++l+ kf+kll+++e+gi++ln++a++L + ++RR+YDi+NVLe+++l++k +k+++ estExt_gwp_GeneWisePlus.C_Chr_02.00010270 33 SSLGVLSAKFMKLLSETENGILDLNHAATSL---SA--QKRRVYDITNVLEGIGLVSKLSKSKV 91 79***************************...77..******************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01372	6.1E-24	30	95	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.2E-20	31	91	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02319	5.0E-19	33	91	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	9.66E-13	33	90	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000902	Biological Process	cell morphogenesis
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042023	Biological Process	DNA endoreduplication
GO:0051782	Biological Process	negative regulation of cell division
GO:0005667	Cellular Component	transcription factor complex
GO:0005730	Cellular Component	nucleolus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MVEKHVLSSK RSLGRFERYA RAHCLNSADT SCSSLGVLSA KFMKLLSETE NGILDLNHAA 60 TSLSAQKRRV YDITNVLEGI GLVSKLSKSK VALRRVDEDF VETTSGQHKE HKSLSRTVNI 120 ESSQTLPLAS EDDASLHIET IRSFIRSTGI FISQADIIEQ HALSSDMLIA VRAPTGAALL 180 LPSPFTQERS PPHYRLFLRS NENSSAGVEV FTLGRRSGTC DAHDVIQILN GFSSLCREAQ 240 RAVWLLNSCD VLYFDINKDH VPVSFATILE FDNVHHNVTL IRQLPTFFLG VLFCHFLQVG 300 NVFGTYSQGE KF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_A	1e-15	34	96	11	74	PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00190	DAP	Transfer from AT1G47870	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY675103	0.0	AY675103.1 Ostreococcus tauri transcription factor E2F (E2F) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022840737.1	1e-131	E2F Family
TrEMBL	Q5SCB1	0.0	Q5SCB1_OSTTA; Transcription factor E2F
STRING	A0A090M7E9	1e-130	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3258	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47870.2	3e-27	E2F/DP family protein

Publications ? help Back to Top
Robbens S, et al. Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri. Mol. Biol. Evol., 2005. 22(3): p. 589-97 [PMID:15537805]