PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_25091.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 163aa    MW: 18098.7 Da    PI: 4.4207
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_25091.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like57.62.8e-18114163151
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                            k+r++Wt eLH++Fv+av+ L G+e+A  k+il++m+ +gL  e++ SHLQ
  evm.TU.contig_25091.1 114 KNRIVWTDELHNKFVHAVDFL-GAEEAFSKNILQHMNAPGLRKEDISSHLQ 163
                            68*******************.999*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-11112163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-17113163IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-14114163IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSTDPDENGI LGSLDNGAEF HLVKPLTYDD VRILWQFSVL RKIELNRLPS SSSSSENGMS  60
SSAAESLDIF NSISLESDDD EESDANQSGS KRKQPENSSS RNSDDNSDSS IVKKNRIVWT  120
DELHNKFVHA VDFLGAEEAF SKNILQHMNA PGLRKEDISS HLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_25091.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904504.11e-112two-component response regulator ARR14-like
RefseqXP_021911967.11e-114two-component response regulator ARR14-like, partial
STRINGevm.TU.contig_25091.11e-114(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-14response regulator 2