PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_26556.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 518aa MW: 56912.9 Da PI: 7.0008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_26556.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00075	414	446	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A+ YIk Lq evm.TU.contig_26556.1 414 DRITALQQIVSPF-----GKTDTASVLLEAIGYIKFLQ 446 6788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.175	396	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.09E-9	411	461	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-8	411	454	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.79E-4	414	450	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MAEECTESSV ATSSSTPQNW PWDLHHHHNH AASWTTACWH QQQNPNSNNS SCEDDVSIST 60 SFTNASNHSG LTVDSSRPLL ESASSNDFMP EHQHAASDNH LWTHLLLHGG SNGELGNNQD 120 VGENLVDPLS SKSVSTGILE APYDYLKKVG SNWEFSNFDH PNQTDQIRFT KLSNLVSNWS 180 IAPPDPEEIN TTTHFDPHTT SCNISLATNK FSNSSNNHYS QLKQSLISPS TGSNLLLSYA 240 PHHLKVENNQ DHNHIINNID QAPTTAYLNR RSSSSIGGYG NIGYHIGVNS NNNSVVVEGV 300 DNYVMSQYAL PCLSTTSTIA DSPLHFPSRL TKPLIDAHAS RPCTKPLHLS DSKKQALPTT 360 TPTKANGRMQ GGVLTNEGKK KRSEETSDAA LKKPKHENST VNSSVKAPKV KLGDRITALQ 420 QIVSPFGKTD TASVLLEAIG YIKFLQEQVQ LLSNPYMKSS SHKDPWGALD RKDKGEMKLD 480 LRSRGLCLVP LSCTPQIYRE NAGSDYWSPT YKGFLYR*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MAEECTESSV ATSSSTPQNW PWDLHHHHNH AASWTTACWH QQQNPNSNNS SCEDDVSIST  60
SFTNASNHSG LTVDSSRPLL ESASSNDFMP EHQHAASDNH LWTHLLLHGG SNGELGNNQD  120
VGENLVDPLS SKSVSTGILE APYDYLKKVG SNWEFSNFDH PNQTDQIRFT KLSNLVSNWS  180
IAPPDPEEIN TTTHFDPHTT SCNISLATNK FSNSSNNHYS QLKQSLISPS TGSNLLLSYA  240
PHHLKVENNQ DHNHIINNID QAPTTAYLNR RSSSSIGGYG NIGYHIGVNS NNNSVVVEGV  300
DNYVMSQYAL PCLSTTSTIA DSPLHFPSRL TKPLIDAHAS RPCTKPLHLS DSKKQALPTT  360
TPTKANGRMQ GGVLTNEGKK KRSEETSDAA LKKPKHENST VNSSVKAPKV KLGDRITALQ  420
QIVSPFGKTD TASVLLEAIG YIKFLQEQVQ LLSNPYMKSS SHKDPWGALD RKDKGEMKLD  480
LRSRGLCLVP LSCTPQIYRE NAGSDYWSPT YKGFLYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_26556.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021898928.1	0.0	transcription factor bHLH123-like
TrEMBL	D7TAI8	1e-165	D7TAI8_VITVI; Uncharacterized protein
STRING	evm.TU.contig_26556.1	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8055	19	23
Representative plant	OGRP9620	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	3e-61	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.TU.contig_26556.1