PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_28448.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 146aa    MW: 17074.3 Da    PI: 10.3161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_28448.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.4e-151151343
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                           i n+s r+  + kR++g++KK +ELS+LCd++++ ii+s+ 
  evm.TU.contig_28448.1 11 ITNDSARKAMLEKRKKGLIKKVSELSTLCDVKACAIIYSPY 51
                           89*************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-18159IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.035149IPR002100Transcription factor, MADS-box
CDDcd002667.47E-21269No hitNo description
PRINTSPR004043.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MTRKKVKLAY ITNDSARKAM LEKRKKGLIK KVSELSTLCD VKACAIIYSP YDSKQERLPE  60
MEQSKKMVNQ EIFLCQKIAK ATDQLKKQCK DNREKEITYI MFQSLIRKPL HQLNLIDLNN  120
LGWLIEQYLK EIQKSIKTLW KSPQP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_28448.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021912473.13e-87agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-47AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0A0LVS32e-58A0A0A0LVS3_CUCSA; Uncharacterized protein
STRINGevm.TU.contig_28448.11e-101(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-49AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]