PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_30141.2

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 248aa MW: 27536.2 Da PI: 6.1755

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_30141.2	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00044	32	78	1	51
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 +r+ + erE+ R+++N+ f eL l ++ + Ka+iL ++ + + evm.TU.contig_30141.2 32 KRVHKAEREKMKREHLNELFIELGNALELT----QQNNGKASILCETSRLL 78 79999**********************996....45666677776665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.5E-7	29	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-10	31	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.48	31	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MVSETPAPEN VEKVYVPSNV SDNRSSKGKI PKRVHKAERE KMKREHLNEL FIELGNALEL 60 TQQNNGKASI LCETSRLLKD LFDQIESLKK ENASLISESR DVTIEKKELK EENSALETQI 120 EKLQNEIAAR VAQCKPDLNI PPLEFQQSEL MSHFPGHGLG MPAGDALQQA PAVLVVPLHR 180 DLQAYPATDI TQPMLKPPSH VSKPHARYPT PADSWPSQLL REQPLAGKEF ICRGSDDGVN 240 NSPEQGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_30141.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896453.1	0.0	transcription factor bHLH47
Swissprot	Q9SN74	9e-67	BH047_ARATH; Transcription factor bHLH47
TrEMBL	A0A061FX23	1e-97	A0A061FX23_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRING	evm.TU.contig_30141.2	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11720	23	31
Representative plant	OGRP6793	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	4e-69	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.TU.contig_30141.2

Publications ? help Back to Top
Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]