PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_30708.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 429aa    MW: 45304.3 Da    PI: 6.5065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_30708.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12218263555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  evm.TU.contig_30708.1 218 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 263
                            99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.83E-13211267No hitNo description
SuperFamilySSF474594.97E-17211273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16215272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9218263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MQPCSREMQA MNSLLNQSHQ IPLQEQQQQQ QQQQQQHSQI QNPQFDSSSH DDFLEQMLST  60
LPSCSWGSDP ATALKSSPWV DEPAPSDFHA AHFSDESAIL ASKLRQHQIS GGSPAAAAAA  120
AAKMMMQHHQ QIMMMPLSLG AESHQNDVVD GSSSSSFKSP SNHQGGPMQQ AQNFGAPSAV  180
MNQTQPQIQP QASGSTGGAS AQPRQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV  240
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADLSSE GGGDCIQGNG  300
NGNGNGNGGT HARNNTASSN DSLTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA  360
ISTATCHSRG PMINNAAVPT NNNNPLLQSN GEGPSSPSMS VLTVQSATVG NGGTEPSSVK  420
DAASVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_30708.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911649.10.0transcription factor bHLH66-like
SwissprotQ9ZUG91e-95BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A061GR230.0A0A061GR23_THECC; LJRHL1-like 1
STRINGevm.TU.contig_30708.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-69LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]