PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_32926.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C2H2

Protein Properties

Length: 246aa MW: 26992.4 Da PI: 5.2632

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_32926.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.1e-06	120	141	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C+k Fs++ + H+++H evm.TU.contig_32926.1 120 SCPECDKKFSSWKAMFGHMKKH 141 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.162	119	146	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0023	119	141	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	121	141	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.1E-6	121	143	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSDEQVPGSP STVNEENQQE LVIQNLDHPD KASSQGSHDH LNPNDHVNPD DHEEKLERHE 60 YEKTEEAPTA NKGGGDGSGQ KKKRKGRSKV DGDDQVGSSS GGVRKHKRPR VLDAPNCKPS 120 CPECDKKFSS WKAMFGHMKK HPGKGYEGAF PPPKFTPPTS PKKPVSADEQ RGIEEAVPAL 180 LHLARRMTGT DDDRETEEDG GGTRREIEIN LNDSQKPQEE EPPSLSETGD VKGFDLNLTP 240 PHEDN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_32926.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021911482.1	1e-180	uncharacterized protein LOC110825339
STRING	evm.TU.contig_32926.1	1e-180	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41
Representative plant	OGRP11290	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	3e-08	C2H2 family protein

Link Out ? help Back to Top
Phytozome	evm.TU.contig_32926.1