PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_33658.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 249aa    MW: 28091.8 Da    PI: 8.6352
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_33658.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-193276147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  evm.TU.contig_33658.1 32 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 76
                           89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.0541326IPR017877Myb-like domain
SuperFamilySSF466895.56E-231384IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-121339IPR009057Homeodomain-like
PROSITE profilePS5129429.4272781IPR017930Myb domain
SMARTSM007174.6E-183179IPR001005SANT/Myb domain
PfamPF002493.0E-173276IPR001005SANT/Myb domain
CDDcd001674.53E-143477No hitNo description
Gene3DG3DSA:1.10.10.606.4E-254078IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MRLFYCPVSG LLRCGKSCRL RWINYLRPDL KRGNFTEEED ELIIKLHSLL GNKWSLIAGR  60
LPGRTDNEIK NYWNTHIKRK LISRGIDPQT HRLLNESNPP PVSTQLDFKN SSSSPHPPRI  120
SLNPNSVTLD LKFDEFQPKP KTESVEEAIC SSSGMTTDEE QHKGGSHEYQ EEINLELSVG  180
LAPSRTHSSS AKNNNNNTAE SKLQKVPFLF GTSMVTQPVC LCCHLGSRKS EPCRNCQTAN  240
GLYRYYIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22138140108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_33658.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0884951e-167JN088495.1 Vasconcellea monoica clone BAC-MN13O12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911405.10.0transcription factor MYB3-like
SwissprotQ9S9K95e-71MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A2I4GB567e-97A0A2I4GB56_JUGRE; transcription repressor MYB6-like
STRINGevm.TU.contig_33658.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-73myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]