PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_34101.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 91aa    MW: 10590.5 Da    PI: 10.6657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_34101.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053581551
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51
                           + e+E  R  r + ++++ +  l k+ +++++ l+K++ Le+ v Y+
  evm.TU.contig_34101.1 35 AFEVEMERLYRAKVRLDNMKHTLLKLKNQKARNLNKSQLLEESVIYV 81
                           67899999999999***********85666666**********9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
INLEFNDDMS LKKLLKAKRK ENKKVGIAAG HRWQAFEVEM ERLYRAKVRL DNMKHTLLKL  60
KNQKARNLNK SQLLEESVIY VPVAELKEKA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_34101.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893119.13e-53pathogenesis-related homeodomain protein-like
TrEMBLA0A2I4FY993e-21A0A2I4FY99_JUGRE; pathogenesis-related homeodomain protein-like isoform X1
TrEMBLA0A2I4FYA23e-21A0A2I4FYA2_JUGRE; pathogenesis-related homeodomain protein-like isoform X2
STRINGevm.model.supercontig_95.116e-52(Carica papaya)
STRINGevm.TU.contig_34101.11e-57(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738