PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_35436.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 133aa    MW: 14788.5 Da    PI: 4.5273
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_35436.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.42.1e-10107130124
                G2-like   1 kprlrWtpeLHerFveaveqLGGs 24 
                            kprl+Wt eLH+rF+ av+qLGGs
  evm.TU.contig_35436.1 107 KPRLKWTGELHDRFLGAVKQLGGS 130
                            79*********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-7107129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSDNRINVEM IRAGMKDKGK GIFVEESPHE VNHSCYRKLR DGRRDQLDHG DSNTLLFLQE  60
TMAPSTPVVK SINDDLDFVL IDDIDDENSE EVEEEAGGPL AVSTVMKPRL KWTGELHDRF  120
LGAVKQLGGS FS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_35436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.TU.contig_35436.13e-93(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.24e-08G2-like family protein