PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_36549.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 79aa MW: 8995.25 Da PI: 4.5516

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_36549.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.4	1.6e-05	6	46	15	55
HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++N+ ++L+ ll + + + p+ ++ +e++++++ YI+ Lq evm.TU.contig_36549.1 6 EMNDFVSKLQALLSQlD-HIPNSRVATSEVVKETCSYIRRLQ 46 58999999999999955.89*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.8E-6	6	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-7	6	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MNEEFEMNDF VSKLQALLSQ LDHIPNSRVA TSEVVKETCS YIRRLQREID DLSERLSRLL 60 DANPIALHVD TLIALLQQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_36549.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021651758.1	2e-19	transcription factor PRE3-like
TrEMBL	A0A2R6PRU8	6e-17	A0A2R6PRU8_ACTCH; Transcription factor like
STRING	evm.TU.contig_36549.1	2e-49	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP13203	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	1e-08	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.TU.contig_36549.1