PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_37010.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 214aa    MW: 24223.9 Da    PI: 4.1707
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_37010.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.21.3e-096411772128
                    NAM  72 krknratksgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            +r   +  +gyWk   +  +e++  ++ ++g k+ L+++   + +g++t+Wvm+eyr+
  evm.TU.contig_37010.1  64 RRDDVVGGRGYWKPASEiAEEIVF-NDDKIGEKRELIYF---EADGSETQWVMDEYRM 117
                            333445679****66553788888.8999**********...677888********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.9891143IPR003441NAC domain
SuperFamilySSF1019414.58E-1819143IPR003441NAC domain
PfamPF023653.9E-1119117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDFDPADLAK AMSLLSLGRF HPNDHQLILH FLTRKAMGLP LPQNRIYITA IDKWTNPQEL  60
TDDRRDDVVG GRGYWKPASE IAEEIVFNDD KIGEKRELIY FEADGSETQW VMDEYRMFLA  120
DEPPSSAKPD NVEEWLVYKL RNKKDVDVYD STDLDESDDV VSQIAREAAA AAALCILYEL  180
LDNEEEDAPP ASSTSTSEDL PDPKRRKGNT SGVI
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_37010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021901179.11e-147NAC domain-containing protein 68-like
STRINGevm.TU.contig_37010.11e-156(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-10NAC domain containing protein 32