PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_38183.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 43aa MW: 5059.38 Da PI: 11.2882

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_38183.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.2	3.9e-05	17	34	2	19
HHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsa 19 r +h+e E+rRR++iN++ evm.TU.contig_38183.1 17 RSKHSETEQRRRSKINER 34 899*************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.8E-5	12	34	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 43 aa Download sequence Send to blast
MAKVDGKSTG QKANAHRSKH SETEQRRRSK INERQTYFFP SFX

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_38183.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	evm.TU.contig_38183.1	4e-23	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.5	3e-08	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.TU.contig_38183.1