PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_38558.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 259aa    MW: 29653.3 Da    PI: 8.9617
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_38558.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS96.83.3e-301432584121
                   GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                             L +cA+av++ +++ a+++L  +++++sp g+ ++Rla+yf++AL arla+ +s+ ++++ +s+++  + ++ + ++k+++ v+P+ 
  evm.TU.contig_38558.1 143 PLNQCAQAVANMNQKTANEMLYLIRQHSSPFGNGTERLAHYFANALDARLAGASSTFSSQILSSRKA--SATDIIRVYKAYVSVCPFR 228
                            599*************************************************777777766444444..499**************** PP

                   GRAS  92 kfshltaNqaIleavegeervHiiDfdisq 121
                            ++s+  aN+ I + +e+ +++HiiDf+is+
  evm.TU.contig_38558.1 229 RVSNRFANRNIAKIAENLTKIHIIDFGISY 258
                            ****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.946114259IPR005202Transcription factor GRAS
PfamPF035141.1E-27143258IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
RRAFRRRNGG HLSMLQDPLA LQAAERSFYN ALIGQDHLPN SSRHFKKITQ NPAGFTYESD  60
LEFNSSGGRK HHPYKDELEE RCCRKSAEVT EMLNREFVVD ENGDRVLCCP FDDPIKRKEY  120
EKLIEQDRMQ LYMESGIVDL WSPLNQCAQA VANMNQKTAN EMLYLIRQHS SPFGNGTERL  180
AHYFANALDA RLAGASSTFS SQILSSRKAS ATDIIRVYKA YVSVCPFRRV SNRFANRNIA  240
KIAENLTKIH IIDFGISYX
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_38558.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982223.11e-46PREDICTED: scarecrow-like protein 30
TrEMBLA0A061GXR27e-46A0A061GXR2_THECC; GRAS family transcription factor, putative
STRINGevm.TU.contig_38558.10.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-38SCARECROW-like 14