PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_38884.2

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

M-type_MADS

Protein Properties

Length: 171aa MW: 18990.1 Da PI: 8.5277

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_38884.2	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.5	4.5e-10	91	130	10	49
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +v fs ++ ++KK +EL++L +a++ +iifs+++k++ + evm.TU.contig_38884.2 91 KVIFSMCQAKLFKKMSELCTLFGADIVIIIFSPSQKVFSF 130 5678888899***************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-4	28	133	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.89E-12	89	150	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-13	89	130	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.722	89	134	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MALDEDLSLA QLRQLKASLD ELKKNMVKCV EKIMIHTSNN HPHRHNHPHH PFFMGISSSG 60 ANVPFETSPA RFHSTIGPFN NPNMMPPGNL KVIFSMCQAK LFKKMSELCT LFGADIVIII 120 FSPSQKVFSF GHPSVEIVVE HFISSPPQDA SGSMKCFKAH RNTSVCELNM *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_38884.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021911656.1	2e-32	agamous-like MADS-box protein AGL62, partial
STRING	evm.TU.contig_38884.2	1e-122	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-20	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	evm.TU.contig_38884.2