PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_39547.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 110aa    MW: 12162 Da    PI: 9.6377
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_39547.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.8e-152761895
                           --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                     B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                           +p +f  ++   ++++++++l++++g  W+v+   + k+++ +++ +GW  Fv+ n++k gD+++F+l++  + e++v+
  evm.TU.contig_39547.1  2 IPYQFSVAYL--PNCKTKIILRNLQGDHWTVNSVPDSKGRMgHTFCGGWMAFVRGNDIKMGDTCIFELTS--KWEMYVH 76
                           8999988885..458899***************775555545*************************865..4455665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.717181IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-19279IPR015300DNA-binding pseudobarrel domain
PfamPF023625.0E-12276IPR003340B3 DNA binding domain
SMARTSM010190.0085281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-17278IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-13267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
KIPYQFSVAY LPNCKTKIIL RNLQGDHWTV NSVPDSKGRM GHTFCGGWMA FVRGNDIKMG  60
DTCIFELTSK WEMYVHMSGH GKKGIEHQLG RLASNEMLGS SATGNRSPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_39547.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846617.14e-48PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_018846618.14e-48PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X2
RefseqXP_018846619.13e-48PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X3
TrEMBLA0A2I4GRU46e-47A0A2I4GRU4_JUGRE; B3 domain-containing protein Os01g0723500-like isoform X3
TrEMBLA0A2I4GRU69e-47A0A2I4GRU6_JUGRE; B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A2I4GRU79e-47A0A2I4GRU7_JUGRE; B3 domain-containing protein Os01g0723500-like isoform X1
STRINGevm.TU.contig_39547.14e-78(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16907911
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.19e-07B3 family protein