PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_40216.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 225aa    MW: 24812.2 Da    PI: 6.39
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_40216.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.7e-105089344
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                            WT+ E +ll++ + ++G + W+++a+ ++ ++t  +c+s++
  evm.TU.contig_40216.1 50 VWTEAETLLLLESILKHGDD-WELVAQNIP-TKTKLDCISKL 89
                           6*****************88.*********.*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-74086IPR009057Homeodomain-like
PROSITE profilePS5129316.1094697IPR017884SANT domain
SMARTSM007171.2E-74795IPR001005SANT/Myb domain
SuperFamilySSF466894.64E-947100IPR009057Homeodomain-like
PfamPF002497.3E-105089IPR001005SANT/Myb domain
CDDcd001674.21E-85188No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
LWKLKNNLHV QGNFIICIKC FKNGNYGENK SADDFKLSNC IESDRHCGVV WTEAETLLLL  60
ESILKHGDDW ELVAQNIPTK TKLDCISKLI ELPFGELMLS SVHGSDNFAG SSGTVDGTKN  120
VTLPSFEHQE SIKGGDPDHE QINDNELNGG AASEEPLLKR RQVALPSDAG SSLMNQFFPQ  180
VGGSVCSMVI LKKRMCLALN VVRRLDKART SQYRATWLGH LLEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_40216.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910992.11e-117SWI/SNF complex subunit SWI3A-like, partial
TrEMBLA0A2C9VQA23e-59A0A2C9VQA2_MANES; Uncharacterized protein
TrEMBLA0A2C9VQB42e-58A0A2C9VQB4_MANES; Uncharacterized protein
STRINGevm.TU.contig_40216.11e-166(Carica papaya)