PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_40990.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

BES1

Protein Properties

Length: 85aa MW: 9842.39 Da PI: 10.791

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_40990.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	161.5	5.5e-50	2	73	1	72
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkg 72 ++++r+ptwkErEnnkrRERrRRaiaakiyaGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrk evm.TU.contig_40990.1 2 TSGTRMPTWKERENNKRRERRRRAIAAKIYAGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKL 73 5899******************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.3E-47	3	74	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MTSGTRMPTW KERENNKRRE RRRRAIAAKI YAGLRMYGNY KLPKHCDNNE VLKALCNEAG 60 WTVEEDGTTY RKLLARVLVA RFPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	2e-23	6	72	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	2e-23	6	72	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	2e-23	6	72	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	2e-23	6	72	372	438	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
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Functional Description ? help Back to Top
Source	Description
UniProt	May function in brassinosteroid signaling. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_40990.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015875603.1	7e-47	BES1/BZR1 homolog protein 4 isoform X1
Refseq	XP_023879306.1	6e-47	BES1/BZR1 homolog protein 4-like isoform X1
Refseq	XP_023879307.1	6e-47	BES1/BZR1 homolog protein 4-like isoform X2
Refseq	XP_024929005.1	7e-47	BES1/BZR1 homolog protein 4 isoform X2
Swissprot	Q5Z9E5	4e-29	BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBL	A0A0D2ULT4	6e-46	A0A0D2ULT4_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5FDI8	4e-46	A0A2P5FDI8_TREOI; BES1/BZR1 transcription factor
STRING	evm.TU.contig_40990.1	6e-56	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15511	11	17
Representative plant	OGRP1595	15	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	6e-29	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	evm.TU.contig_40990.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]