PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_41482.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C3H

Protein Properties

Length: 255aa MW: 29033.9 Da PI: 7.7539

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_41482.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.4	2.9e-09	87	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f++ G C+ G++C+FaHg evm.TU.contig_41482.1 87 FKTRVCAKFRA-GNCRNGENCNFAHG 111 69*******.***********9 PP
2	zf-CCCH	27.7	4.5e-09	149	171	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yG+rC+F H evm.TU.contig_41482.1 149 MKLCKKFYNGEECPYGERCNFLH 171 689****66********** PP
3	zf-CCCH	34.9	2.6e-11	227	253	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + t +C++ d+C+FaHg+ evm.TU.contig_41482.1 227 WKTKLCTKWETTSHCPFSDKCHFAHGQ 253 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.1E-14	84	119	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-8	85	117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.6E-6	86	112	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.159	86	113	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-7	87	111	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.003	146	173	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.873	146	174	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.53E-7	146	173	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-6	149	171	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-8	149	172	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-8	222	253	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-13	222	253	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-4	226	253	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.404	226	254	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-8	227	253	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSYSDSHPSI MQTPFNGGGS DAIGIWPQYP MSNESFDLHT QFDQQQQPPP FKRSRHEDNQ 60 SSSSPYQSNS RTPINPPVNK GTSNIFFKTR VCAKFRAGNC RNGENCNFAH GVEDLRQPPP 120 NWQELVGARG DEERSSGNWE DDQRIIHRMK LCKKFYNGEE CPYGERCNFL HEDPAKFRDD 180 NRFRESSAIS IGTTPPPVVH GSGGTQSEVN RSANNNNMMM MMKPVYWKTK LCTKWETTSH 240 CPFSDKCHFA HGQAX

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_41482.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910943.1	0.0	zinc finger CCCH domain-containing protein 39-like, partial
Swissprot	Q9LT81	9e-79	C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBL	A0A251JD93	1e-118	A0A251JD93_MANES; Uncharacterized protein
STRING	evm.TU.contig_41482.1	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10066	25	36
Representative plant	OGRP2045	17	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-77	C3H family protein

Link Out ? help Back to Top
Phytozome	evm.TU.contig_41482.1