PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_42663.2
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 103aa    MW: 11961.9 Da    PI: 10.4642
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_42663.2genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.3e-18956148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l ++v+++G g W++++   g++R++k+c++rw++yl
  evm.TU.contig_42663.2  9 KGAWTAEEDDRLRKCVEKYGEGKWHRVPFAAGLNRCRKSCRLRWLNYL 56
                           79*********************************************7 PP
2Myb_DNA-binding37.17.6e-1262102143
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                            r ++T +E +l  + +k+lG++ W++Ia +++ gRt++++k++
  evm.TU.contig_42663.2  62 REKFTVDEVDLMMRMHKLLGNR-WSLIAGRLP-GRTANDIKNY 102
                            789*******************.*********.********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.422160IPR017930Myb domain
SuperFamilySSF466892.73E-296102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-22659IPR009057Homeodomain-like
SMARTSM007171.2E-13858IPR001005SANT/Myb domain
PfamPF002491.4E-16956IPR001005SANT/Myb domain
CDDcd001672.65E-101156No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1760102IPR009057Homeodomain-like
PROSITE profilePS5129413.86661102IPR017930Myb domain
SMARTSM007170.01661102IPR001005SANT/Myb domain
PfamPF002495.3E-1062102IPR001005SANT/Myb domain
CDDcd001671.00E-664102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MEAPLGLKKG AWTAEEDDRL RKCVEKYGEG KWHRVPFAAG LNRCRKSCRL RWLNYLSPNI  60
NREKFTVDEV DLMMRMHKLL GNRWSLIAGR LPGRTANDIK NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-217102296MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-217102296C-Myb DNA-Binding Domain
1msf_C1e-217102296C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_42663.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910894.14e-71LOW QUALITY PROTEIN: transcription factor MYB114-like
SwissprotQ9FNV93e-53MY113_ARATH; Transcription factor MYB113
TrEMBLB6V7D29e-57B6V7D2_VITVI; R2R3 MYB transcription factor
STRINGevm.TU.contig_42663.22e-70(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-55myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]