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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | evm.TU.contig_42681.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family | B3 | ||||||||
| Protein Properties | Length: 101aa MW: 11639.5 Da PI: 8.2293 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 34.7 | 3.2e-11 | 19 | 70 | 39 | 90 |
EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
B3 39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90
+ +++sWe+ + +r ++ + ++Wk+Fv +n+Lk+ D +vF+l+++ ++f
evm.TU.contig_42681.1 19 LTCKSKSWEMVC-HREHKHLKNFDRNWKHFVVDNELKVADACVFELMENtRRF 70
55678*******.44444447799*********************99875555 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50863 | 9.122 | 1 | 78 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 5.3E-11 | 6 | 68 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 4.4E-10 | 7 | 67 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 3.05E-9 | 8 | 70 | No hit | No description |
| Pfam | PF02362 | 1.2E-9 | 17 | 70 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 101 aa Download sequence Send to blast |
VPPAKMQHFL PTEAIPTILT CKSKSWEMVC HREHKHLKNF DRNWKHFVVD NELKVADACV 60 FELMENTRRF SNSKSTFSEV TFCYLYLWPS MGLGAGQICS * |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | evm.TU.contig_42681.1 |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| STRING | evm.TU.contig_42681.1 | 4e-71 | (Carica papaya) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM18654 | 5 | 6 | Representative plant | OGRP7665 | 9 | 16 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | evm.TU.contig_42681.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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