PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_43368.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 31aa    MW: 3803.64 Da    PI: 12.1923
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_43368.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.63.3e-081131323
                           --SHHHHHHHHHHHHHHHHHH CS
                 SRF-TF  3 ienksnrqvtfskRrngilKK 23
                           i n+  r++tf kR++g++KK
  evm.TU.contig_43368.1 11 ITNDFARKTTFKKRKKGLMKK 31
                           89******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.096131IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-9131IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-6323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-71131IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-62331IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 31 aa     Download sequence    Send to blast
MTRNKVRLTY ITNDFARKTT FKKRKKGLMK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_43368.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-