PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_45261.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 124aa    MW: 14740.8 Da    PI: 5.8493
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_45261.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.25.4e-2261223128
                    NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                             Gf+F P+deel  + L  k++g+       ++evd y+ ePw      k+e +  y F++ +kk  + +r +r++  g+Wk   +  
  evm.TU.contig_45261.1   6 IGFHFTPSDEELF-QILGMKLRGEYEG--GGVTEVDPYEKEPWLVF-D-KNEPTTFYVFTSLKKK--SRSRMERKVGCGTWKMERS-V 85 
                            6***********9.88*****999844..46************995.2.2344455666666665..568************8877.5 PP

                    NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ev++ +++++g kk+L+f  ++++++e+ +W+mhey+l
  evm.TU.contig_45261.1  86 EVVDWEENVIGFKKMLTFE-EKKKNTENGRWIMHEYSL 122
                            55566999**********8.5666779*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.4494124IPR003441NAC domain
PfamPF023652.1E-156122IPR003441NAC domain
SuperFamilySSF1019416.28E-216123IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDVARIGFHF TPSDEELFQI LGMKLRGEYE GGGVTEVDPY EKEPWLVFDK NEPTTFYVFT  60
SLKKKSRSRM ERKVGCGTWK MERSVEVVDW EENVIGFKKM LTFEEKKKNT ENGRWIMHEY  120
SLRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_45261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910774.13e-87NAC domain-containing protein 19-like, partial
TrEMBLA0A059BX487e-26A0A059BX48_EUCGR; Uncharacterized protein
STRINGevm.model.supercontig_12.1562e-86(Carica papaya)
STRINGevm.TU.contig_45261.11e-86(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5881218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.15e-12NAC domain containing protein 86