PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_45270.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 148aa MW: 16487.7 Da PI: 6.8042

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_45270.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	22.4	2.8e-07	124	145	1	22
G2-like 1 kprlrWtpeLHerFveaveqLG 22 k++++Wt+eLH++F++a++ LG evm.TU.contig_45270.1 124 KNKIVWTHELHNKFLQAIDFLG 145 6899*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.5E-5	123	147	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MSSDRDENGI LGSLYKGAEF HLVKPLTYSD VQSLWQFSVL RKIKLNRFAS SSSSSSDQGM 60 NTSAAESRHI FGSISLGSND DDDDSGANHS SGRWSHYYGS KRKQPENSSS RSSDENFDSS 120 IVKKNKIVWT HELHNKFLQA IDFLGADX

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_45270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021903262.1	4e-47	two-component response regulator ARR14-like
STRING	evm.TU.contig_45270.1	1e-102	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	2e-06	response regulator 10

Link Out ? help Back to Top
Phytozome	evm.TU.contig_45270.1