PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_45420.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family BBR-BPC
Protein Properties Length: 177aa    MW: 19617 Da    PI: 7.363
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_45420.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind1191.2e-36251751138
              GAGA_bind   1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkl 81 
                            mdd g+re  r+k+ +y+ a  + l +++   +q+m+++aerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erdn++
  evm.TU.contig_45420.1  25 MDDGGHREngRHKAdQYKTAqgQWLMQHQpsMKQIMAIMAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDNAI 112
                            9*****999*****9**9554444444431135******************************************************* PP

              GAGA_bind  82 lalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpie 138
                            ++l+++ensla    s++p+g+q+++g+k++++ qq +++ p++++ ++++re++  +a p++
  evm.TU.contig_45420.1 113 ATLQYRENSLAsgnlSSCPPGCQISRGVKHMHHPQQhVHHmPHMSEGPYGTREMHSGDAIPVS 175
                            *********9999999********************65558**************99999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.4E-1825175IPR010409GAGA-binding transcriptional activator
SMARTSM012266.6E-1125177IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MACGGGVGLK TCLFLGSDIP FEKQMDDGGH RENGRHKADQ YKTAQGQWLM QHQPSMKQIM  60
AIMAERDAAI QERNLAISEK KAAIAERDMA FLQRDTAIAE RNNAIMERDN AIATLQYREN  120
SLASGNLSSC PPGCQISRGV KHMHHPQQHV HHMPHMSEGP YGTREMHSGD AIPVSPX
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_45420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910765.11e-110protein BASIC PENTACYSTEINE6-like, partial
SwissprotQ8L9992e-69BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A2I4DVH49e-93A0A2I4DVH4_JUGRE; protein BASIC PENTACYSTEINE6-like isoform X2
TrEMBLA0A2I4DVH82e-92A0A2I4DVH8_JUGRE; protein BASIC PENTACYSTEINE6-like isoform X1
STRINGevm.TU.contig_45420.11e-130(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.18e-70basic pentacysteine 6