PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_45591.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 212aa MW: 23652 Da PI: 9.0005

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_45591.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	61	146	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YA++ GF + +++s+ + ++g+ t + C ++gk+++ kk + + r+ t+t+Ckak++v e +g ++ +++leHnHel evm.TU.contig_45591.1 61 YYSKYAQREGFGIMRRSSRCR-EDGKLTYFILACAQSGKTRSIAKK---RFQFRQLTKTNCKAKINVVVEPEGCVHICNVVLEHNHEL 144 9***********9987775.9999**********999887...8999********************************* PP FAR1 90 ap 91 +p evm.TU.contig_45591.1 145 SP 146 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-15	61	146	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
EMESNSNLKV PFDRDAIDSC CNNRVENGKE EEHGAGGLNG DEVGPPCVGM VFASQDEVRS 60 YYSKYAQREG FGIMRRSSRC REDGKLTYFI LACAQSGKTR SIAKKRFQFR QLTKTNCKAK 120 INVVVEPEGC VHICNVVLEH NHELSPGKKQ RNICKRSGTP RNKRKYALEE LVGAPVQLDS 180 RLASRESWAP LNLPSGANYL QFVLLMKCFA S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_45591.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910756.1	1e-144	protein FAR1-RELATED SEQUENCE 8-like
TrEMBL	A0A2K1ZWF5	3e-60	A0A2K1ZWF5_POPTR; Uncharacterized protein
STRING	evm.TU.contig_45591.1	1e-157	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17343	3	10
Representative plant	OGRP10377	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-10	FAR1 family protein

Link Out ? help Back to Top
Phytozome	evm.TU.contig_45591.1