PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_45808.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 261aa    MW: 29023.5 Da    PI: 6.6966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_45808.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13116162455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  evm.TU.contig_45808.1 116 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 162
                            799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.831112161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.16E-14115166No hitNo description
SuperFamilySSF474592.88E-19115184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10116162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-19116180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MIFGRELSLG GSQSQSVSIN FSPKVENDSG FALDSYDVQA VGSSQVYNNS SNGFRGDDSD  60
VKLFPQLNQM ISGGFNAPAL VPNPELPKDE SFSLPDERKP RKRGRKPANG REEPLNHVEA  120
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITYITD LQMKIRVLET EREMVNNKQQ  180
LTVPEIDFQA QHEDAVVRLS SPLDAHPVSR VIKTFRDHQI AAQESNVSLS ENNVIHTFSI  240
RTQSGAAEQL KDQLVAAFSK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-30110193283Transcription factor MYC2
5gnj_B2e-30110193283Transcription factor MYC2
5gnj_E2e-30110193283Transcription factor MYC2
5gnj_F2e-30110193283Transcription factor MYC2
5gnj_G2e-30110193283Transcription factor MYC2
5gnj_I2e-30110193283Transcription factor MYC2
5gnj_M2e-30110193283Transcription factor MYC2
5gnj_N2e-30110193283Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_45808.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910748.10.0transcription factor bHLH3-like, partial
SwissprotA0A3Q7H2161e-105MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A067FM981e-133A0A067FM98_CITSI; Uncharacterized protein
TrEMBLV4TUI21e-133V4TUI2_9ROSI; Uncharacterized protein
STRINGevm.TU.contig_45808.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Representative plantOGRP94301012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.16e-94bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]