PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.162
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28238.3 Da    PI: 8.8324
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.162genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.43e-31959151
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  evm.model.supercontig_1.162  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
                                 79***********************************************96 PP
2K-box108.95.6e-36781744100
                        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                                  ++ ++ +++ + +++ e+++Lk +ie Lqr++Rh++GedLesLslke+q+LeqqL+++lk+iRs+Kn+l++e+i+elq+kek
  evm.model.supercontig_1.162  78 RQLVAPDSELQGNWSLEYNRLKTKIELLQRNHRHYMGEDLESLSLKEIQNLEQQLDTALKHIRSRKNQLMYESISELQRKEK 159
                                  5566666677889********************************************************************* PP

                        K-box  86 elqeenkaLrkklee 100
                                  ++qe+n++L k+++e
  evm.model.supercontig_1.162 160 AIQEQNTMLAKQIKE 174
                                  ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.352161IPR002100Transcription factor, MADS-box
SMARTSM004329.2E-41160IPR002100Transcription factor, MADS-box
CDDcd002653.27E-43279No hitNo description
SuperFamilySSF554552.35E-34290IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129717.34388178IPR002487Transcription factor, K-box
PfamPF014869.4E-3088172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL VAPDSELQGN WSLEYNRLKT KIELLQRNHR HYMGEDLESL  120
SLKEIQNLEQ QLDTALKHIR SRKNQLMYES ISELQRKEKA IQEQNTMLAK QIKEKEKTLA  180
QQAQWGQQNG NAGPSTVPTF MLPQPPPCLN IGGAYQEEGA EMRRNDLELT LEPIYSTHLG  240
CFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-22174173MEF2 CHIMERA
6byy_B4e-22174173MEF2 CHIMERA
6byy_C4e-22174173MEF2 CHIMERA
6byy_D4e-22174173MEF2 CHIMERA
6bz1_A4e-22174173MEF2 CHIMERA
6bz1_B4e-22174173MEF2 CHIMERA
6bz1_C4e-22174173MEF2 CHIMERA
6bz1_D4e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.162
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910321.10.0truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ6E6S71e-142AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A061EAI91e-150A0A061EAI9_THECC; K-box region and MADS-box transcription factor family protein
STRINGevm.model.supercontig_1.1620.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-132MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]