PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1.264

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

NF-YB

Protein Properties

Length: 162aa MW: 17489.6 Da PI: 5.7211

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1.264	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.9	9.1e-56	25	119	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 vreqdr+lPian+srimkk+lP n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+ep evm.model.supercontig_1.264 25 VREQDRYLPIANISRIMKKALPPNGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEP 106 69****************************************************************************** PP NF-YB 83 lkvylkkyreleg 95 lk+yl++yre ++ evm.model.supercontig_1.264 107 LKIYLARYREGDT 119 *******9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-53	20	120	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-39	28	122	IPR009072	Histone-fold
Pfam	PF00808	1.3E-28	31	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.8E-21	59	77	No hit	No description
PROSITE pattern	PS00685	0	62	78	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.8E-21	78	96	No hit	No description
PRINTS	PR00615	2.8E-21	97	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MADAPTSPAG GSHESGGEQS PHSGVREQDR YLPIANISRI MKKALPPNGK IAKDAKDTVQ 60 ECVSEFISFI TSEASDKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKIY LARYREGDTK 120 GSARGGDGSV KRDAVGGLPG QNAQFLHCLF FIDDALSSFS F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-48	25	116	1	92	Transcription factor HapC (Eurofung)
4g92_B	8e-48	25	116	1	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1.264

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910503.1	1e-102	nuclear transcription factor Y subunit B-1-like
Swissprot	Q9SLG0	5e-76	NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A0H3XV68	2e-96	A0A0H3XV68_VERFO; Nuclear transcription factor Y subunit B-1
TrEMBL	B9SD43	2e-96	B9SD43_RICCO; Ccaat-binding transcription factor subunit A, putative
STRING	evm.model.supercontig_1.264	1e-117	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1480	27	94
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	2e-80	nuclear factor Y, subunit B1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1.264