PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.271
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 444aa    MW: 48744.1 Da    PI: 7.8021
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.271genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-17157206155
                          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  evm.model.supercontig_1.271 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206
                                  78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-9157206IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-16157215IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17158215IPR001471AP2/ERF domain
SMARTSM003801.9E-31158220IPR001471AP2/ERF domain
PROSITE profilePS5103217.859158214IPR001471AP2/ERF domain
CDDcd000183.33E-11158213No hitNo description
SuperFamilySSF541713.99E-6249294IPR016177DNA-binding domain
CDDcd000182.28E-11249294No hitNo description
SMARTSM003808.1E-8250298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MLDLNLDVLV ASESSSCDNH REDEKTMTVL AEPYKLTAEA RAGSVRTQME EEYSGTSNSS  60
IINSLDEAPT NAGVDDDDDR DEKYPSPDSV TQQLFPVAGE KSGPGVEFGF GVGSSVRLDR  120
QWLNLSCAKG SAEAIEGQKI VPQKVKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGDDAD INFSLSDYKD EIKQMRHLSK EEFVHILRRQ  240
STGFSRGSSR FRGVTLHKCG RWEARIGQFL GKNAYDMAAT KCNGREAVTN FEQSNFKING  300
GSGQNLDLSL GISLTPSRRE NVGDLQACSS ETPLKGMSLL ETSASAYLGG QQPNPNTLLS  360
GMYPVSSPNL REQTGERAIE AASSMRSSLS WTWQSNGNVG QMPILNIAAS SGFSSTATLQ  420
QKIHYNNNNP TQNLCLVNHQ KFS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.271
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910160.10.0LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK035e-80RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A061FNN01e-119A0A061FNN0_THECC; Ethylene-responsive transcription factor RAP2-7, putative isoform 1
STRINGevm.model.supercontig_1.2710.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164641011
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-73related to AP2.7