PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.277
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C3H
Protein Properties Length: 148aa    MW: 16757.4 Da    PI: 10.287
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.277genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-0692113426
                                  ---SGGGGTS--TTTTT-SS-SS CS
                      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                    C f+ + G+C  G +CkF+H+
  evm.model.supercontig_1.277  92 IVCEFYKA-GQCTKGFKCKFSHD 113
                                  57996666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.09488115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-788113IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-588114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-490114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPPKVQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKPD STKVAVKKKK  60
EEEKAREKEL NDLFKVAISQ PKVPVGVDPK SIVCEFYKAG QCTKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQGSQTEICL CYRSYAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.277
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818967e-36LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132647e-36LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574423.11e-78zinc finger CCCH domain-containing protein 21
RefseqXP_020595047.12e-80zinc finger CCCH domain-containing protein 21-like, partial
SwissprotQ9SK744e-70C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLA0A2P2K2T82e-78A0A2P2K2T8_RHIMU; Zinc finger CCCH domain-containing protein 11
STRINGevm.model.supercontig_1.2771e-101(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.16e-69C3H family protein