PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_1.438

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 226aa MW: 25052 Da PI: 5.5031

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_1.438	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.4	2.8e-39	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v+ i+ evm.model.supercontig_1.438 7 SCGACKFLRRKCTSGCVFAPYFCYDQaTTHFAAVHKVFGASNVSKLLLHLPVQKRSDAAITISYEALARMRDPIYGCVAQIF 88 6**********************9779************************************************* PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq+++l++e++ l+++ evm.model.supercontig_1.438 89 ALQQQVARLQEEIEILGTQ 107 ***********998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.498	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.2E-37	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRKCTS GCVFAPYFCY DQATTHFAAV HKVFGASNVS KLLLHLPVQK 60 RSDAAITISY EALARMRDPI YGCVAQIFAL QQQVARLQEE IEILGTQMAN FVVAAPNGIS 120 TQATTYQNNK SQFGSPYPHE TMNTMHCHQA ASVNHTGYTT GNQTFDSQMN GQLPPYAWDD 180 ENFLCDSYTN PFTRSTEEVD PEIFANYLWL DSSNNTINLE GINWE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-38	3	121	7	124	LOB family transfactor Ramosa2.1
5ly0_B	1e-38	3	121	7	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_1.438

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910245.1	1e-172	LOB domain-containing protein 33-like
Swissprot	Q9LHS8	2e-59	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A067LJS2	3e-95	A0A067LJS2_JATCU; Uncharacterized protein
STRING	evm.model.supercontig_1.438	1e-171	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359
Representative plant	OGRP405	15	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	8e-62	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_1.438

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]